********>Bugfix 3:
Author:  Scott Brozell
Date:  August 1, 2006

Program:  dock

Description:  default values for missing input parameters are not
correctly assigned when dock6 is run in batch mode, i.e. with -o.

Fix:  make the following changes to the file src/dock/utils.cpp
-------------------------------------------------------------------------
*** utils.cpp	2 Aug 2006 21:19:47 -0000	1.4.2.1
--- utils.cpp	2 Aug 2006 21:22:56 -0000
***************
*** 457,462 ****
--- 457,463 ----
  	  if(no_stdin == true) {
  		param.name = name;
  		param.value = default_value;		
+ 		value = default_value;
  		cout << "WARNING:  No parameter value found for \"" << param.name << "\".  Default value of \"" << param.value << "\" used." << endl;
  	        params_out.push_back(param);
  		cout.flush();
--------------------------------------------------------------------------

Workaround:  run dock6 in interactive mode which will correctly insert
the default values of input parameters.