NEW FEATURES IN DOCK 5.4.0

Default Parameters

We have performed extensive testing on a diverse protein test set to determine the optimal sampling parameters for binding mode prediction.  These parameters have been set as default.  For more information on the optimization procedure, please see Moustakas DM et al, Development and Validation of a Modular, Extensible Docking Program:  DOCK 5 (to be submitted—March 2006).  

Bug Fixes

Several critical bugs have been identified and fixed since the last release. These bugs include:

For DOCK:
•	Energy score is now properly reported for continuous and GB/SA scoring
•	Anchors are now perceived correctly (NOTE:  This bug was introduced between version 5.2.0 and 5.3.0.  It has been corrected to the 5.2.0 version)
•	Manual matching algorithm does not crash